I deleted a bunch of plugins because I suspected that some contained viruses, and I uninstalled a bunch of my plugins. However, when I go into Studio, the plugins still show up in the Plugins tab. How do I fix this?
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Go to the site and go to your inventory > plugins then delete that plugin from your inventory. 
If you have done this go to Manage Plugins in the plugins tab, and click uninstall on chosen ones.
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